Databases available for BLAST search

Peptide Sequence Databases

Gossypium protein sequences (all) (2009-11-17)
     All cotton proteins, of GenBank and UniProt

Nucleotide Sequence Databases

Gossypium nucleotide sequences (all) (2009-11-17)
     All cotton nucleotide sequences, of GenBank, TIGR, PlantGDB, TTU CFGC, and CottonDB.


Gossypium unigene sequences (all) (2009-11-17) , a combination of:

      - GenBank UniGenes,
      - PlantGDB Gossypium EST assmbly,
      - TIGR Cotton Gene Index, and
      - TTU CFGC EST contigs.


Gossypium SSR sequences (all) (2009-11-17)
     All cotton SSR sequences, of stored in CottonDB, which includes sequences not submitted to GenBank.

A. thaliana unigenes (2009-11-17) , a combination of:

      - GenBank UniGenes,
      - PlantGDB Arabidopsis EST assmbly, and
      - TIGR Arabidopsis Gene Index


G. hirsutum unigenes (2009-11-17) , a combination of:

      - GenBank G.hirsutum UniGenes, and
      - PlantGDB G.hirsutum EST assmbly,


G. raimondii unigenes (2009-11-17) , a combination of:

      - GenBank G.raimondii UniGenes,
      - PlantGDB G.raimondii EST assmbly, and
      - TIGR G.raimondii Gene Index


G. arboreum EST contigs (plantgdb) (2009-11-17) , a combination of:

      - GenBank G.arboreum UniGenes,
      - PlantGDB G.arboreum EST assmbly, and
      - TTU CFGC EST contigs.



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