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Current Activities
Current Activities
What's New
Current Activities:
- Adding QTL, trait study and marker data
- Adding germplasm data from China and Uzbekistan
- Bringing data into the genome browser (GBrowse) to display
genomic comparisons between Arabidopsis and Gossypium sequences
- Creating a FAQ (Frequenly Asked Questions) page
- Creating a new data submission page
- Enhancing the Quick Queries page
- Finishing the migration from CottonDB old
(http://algodon.tamu.edu/cdb/index-old.php) to CottonDB new (http://cottondb.org)
What's New:
2009-Jun
New or migrated data:
- 2,937 Monsanto SSR markers
- Update sequence data from GenBank
- Reference records from Proceedings of the Beltwide Conferences (1983-2008)
- Reference records from ASA-CSSA-SSSA International Annual Meetings (2001-2006)
- Reference records from China Journal of Cotton Science (2006-2009)
BLAST
Server:
- Last update Webblast Server sequence databases on 2009-04-07
CMap Viewer:
- QTLs of 15 maps (7T, AP, CS, DS, DT, GV1, HP, im, n2, PE, PK, SA, SF, T3, TW)
(bact to top)
2009-Mar
New or migrated data:
- Universal names for marker, sequence, clone, primer, and probe
- Top names for germplasm records
- Update sequence data
(bact to top)
2008-Sep
New or migrated data:
- 1,085 chromosome/linkage groups of 39 map data
- over 25,000 locus data
- over 3,500 probe data
- over 4,600 references in total
- over 3,000 new sequences, include new GenBank releases and "GA fiber
EST library" contigs
BLAST
Server:
- Last update sequence databases on 2008-08-25
2008-Mar
New or migrated data:
- over 2,800 references and over 600 Journals
- over 500 cotton researchers with contact and research interests
information
- ~100,000 new sequences
BLAST
Server: New available sequence databases:
- Cotton nucleotide sequences (all kinds), of GenBank, TIGR, and PlantGDB.
- A combination of GenBank UniGenes, TIGR Cotton Gene Index, and
PlantGDB Gossypium EST assmbly.
- Gossypium hirsutum UniGene sequences, of GenBank
- Gossypium raimondii UniGene sequences, of GenBank
- All cotton proteins, of GenBank and UniProt
(bact to top)
2007
New or migrated data:
- 9,000 germplasm records of 13 different collections (mainly from US)
- Evaluation data and passport infromation of part of the germplasm records
- Pedigrees of 660 Upland and Pima cultivars (From Bowman et
al. 2006.)
- Cotton related pathogens
BLAST
Server: New sequence database available:
- Cotton SSR/microsatellite sequences, either or not have been submitted to GenBank
- Arabidopsis compressed putative unique transcript sequences, PlantGDB version 157a
- Arabidopsis Gene Index sequence data from TIGR Release 13.0
- Cotton Gene Index sequence data from TIGR Release 8.0
(bact to top)
2006
CottonDB.org
: The new home for CottonDB has been established.
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