** You can help! **
If you have a CottonDB question you want to ask, please let me know. Somebody else probably has the same question.
- Jing, jingyu@tamu.edu

Germplasm

• Gossypium Species Summaries: a table matrix of species names and genome, haploid chromosome number, geographic origin, and number of accessions held, number of sequences, and number of DNA libraries currently available in CottonDB.
  --- Suggested by: Sarah Palmer ---

• Germplasm Trait Evaluation Information [View trait descriptions]
  • Production Traits (set 1): Boll weight, lint index, and lint percent
  • Production Traits (set 2): Boll weight, Seed index, and Productiveness
  • Seed Quality Traits: Embryo index, embryo oil percent, and embryo percent
  • Other Traits (get evaluation results by selecting a sepecific trait below or selecting * for results of all traits).
               (Draw SL) Mean (Draw SL) UHM (Raw ST) Mean 2.5% Span Length 50% Span Length Arealometer A Arealometer D Boll Length Calyx Hairs Colorimeter b Colorimeter Rd E1 Flower Score Leaf Color Leaf Hairs Leaf Lac Leaf Shape Lint color Maturity Petal Color Petal Spot Plant Height Plant Type Pollen Color Protein Percent Seeds/Boll Seed Coat Index Seed Coat Percent Seed Type T0 T1 * Trait (* for all)
             

• Pedigree Data: A list of germplasm with pegidree information.
  

• Germplasm Passport Information, search by country of origin (* for all).
  Country List all origin countries          

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• Map Data Summaries lists species, genome; mapping population parents, type, and size; number of loci; references and contact person for each map currently available in CottonDB.
  
• Mapped Sequences, with information of mapping position.
  --- Suggested by: Cairui Lu ---
  

• Nearby Loci: A list of all Loci that are within a specified distance of a specified Locus on any map.
  Locus List all loci     Distance cM          

• Map Positions, by marker type: Select a marker type to see a list of loci and mapping positions.
  Select marker type   AFLP EST Enzyme Gene MORPH RAPD REMAP RFLP SRAP SSR TRAP *  (* for all).  [view marker type descriptions]          

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• Probe source information: type, sequence name, etc.
  

• Probe mapping information : maps and positions, etc. where they have been mapped.
  

• SSR primers and mapping information.: Select a microsatellite set and the type of information you would like to view.
  BNL* CIR* CM* DPL* GH* HAU* JESPR* MGHES* MUCS* MUSB* MUSS* NAU* STV* TMB* * Microsatellite Set (* for all)           
             Primer source information: primer sequences, repeat motifs, source sequence names, source germplasm.
             Primer mapping information: maps and positions, etc. where they have been mapped.
  

• EST-SSR primers: Primer sequences, source sequences, etc.
  

• SSR Polymorphisms: A list of primer names, allele sizes, germplasm names, germplasm cottondb_id, and species names.
  

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